sccloud.violin

sccloud.violin(adata, keys, by=None, width=300, cmap='Category20', cols=None, use_raw=None, **kwds)[source]

Generate a violin plot.

Parameters

  • adata (AnnData) – Annotated data matrix.

  • keys (Union[str, List[str], Tuple[str]]) – Keys for accessing variables of adata.var_names, field of adata.var, or field of adata.obs

  • by (Optional[str]) – Group plot by specified observation.

  • width (int) – Plot width.

  • cmap (Union[str, List[str], Tuple[str]]) – Color map name (hv.plotting.list_cmaps()) or a list of hex colors. See http://holoviews.org/user_guide/Styling_Plots.html for more information.

  • cols (Optional[int]) – Number of columns for laying out multiple plots

  • use_raw (Optional[bool]) – Use raw attribute of adata if present.

Return type

Element